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RESEARCH COMMUNICATION
1 Department of Cancer Immunology and AIDS, Dana Farber Cancer Institute, Boston, Massachusetts 02115, USA; Departments of 2 Pathology and 3 Neurology, Harvard Medical School, Boston, Massachusetts 02115, USA; 4 URIA-Centro de Patogénese Molecular, Faculdade de Farmácia, University of Lisbon, 1649-019 Portugal
| Abstract |
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[Keywords: Cullin; SOCS-box; BC-box; HIV; Vif; APOBEC3G]
Received August 16, 2004; revised version accepted September 24, 2004.
23 kDa cytoplasmic protein that is required during virus replication to overcome the anti-viral activity of APOBEC3G (for review, see Rose et al. 2004
Ubiquitination is a post-translational modification that controls the activity, localization, and proteasomal degradation of many cellular proteins (for review, see Ulrich 2002
). The E1 ubiquitin activating enzyme transfers ubiquitin to an E2 ubiquitin conjugating enzyme, which together with an E3 ubiquitin ligase transfers ubiquitin to the target protein. Two major families of E3s have been identified: HECT E3s and RING E3s. HECT E3s are defined by their homology to the E6-associated protein C terminus. RING E3s contain an intrinsic zinc-binding RING domain or a tightly associated RING-finger protein that binds the E2. Here, we investigated mechanisms by which Vif targets APOBEC3G for degradation by the ubiquitin-proteasome pathway.
| Results and Discussion |
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We identified Vif-associated cellular proteins that mediate APOBEC3G ubiquitination and degradation by coimmunoprecipitation and mass spectrometry. Several proteins involved in ubiquitination were identified, including Cullin 5 (Cul5), Elongin B (EloB), and Elongin C (EloC) (Supplementary Fig. 1A), which are core subunits of a Skp1-Cullin-F-box (SCF)-like E3 complex (Ulrich 2002
). These results confirm those of Yu et al. (2003
), who reported the identification of a Vif-Cul5-EloBC-Rbx1 complex.
The Vif-Cul5-EloBC complex is analogous to other cullin E3s. The prototype SCF complex consists of Cul1, the RING protein Rbx1, the adaptor subunit Skp1, and an F-box protein that mediates substrate binding and specificity. For Cul5 (or Cul2), the complex contains Rbx1 and the EloB-EloC heterodimer (EloBC), which interacts with a BC-box-containing protein (Kamura et al. 1998
; Zhang et al. 1999
; Querido et al. 2001
). The BC-box is an
10-amino acid degenerate sequence motif [(A/P/S/T)L-X3-C-X3-(A/I/L/V)] that mediates direct binding of BC-box proteins to EloC (Fig. 1A; Kile et al. 2002
). The BC-box-containing protein mediates substrate binding and specificity, playing a role similar to that of F-box proteins. A well-studied BC-box protein is the von Hippel-Lindau (VHL) tumor suppressor, which interacts with the Cul2-EloBC complex to mediate proteasomal degradation of hypoxia inducible factor-1
(HIF-1
) (Kile et al. 2002
). The crystal structure of the VHL-EloBC ternary complex shows that EloC utilizes two distinct interfaces to bind EloB and VHL, while VHL and EloB do not appear to interact (Stebbins et al. 1999
). These findings suggest that Vif promotes ubiquitination of APOBEC3G by forming a Vif-Cul5-EloBC E3 ubiquitin ligase.
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The Vif proteins encoded by HIV-1 and the related lentiviruses HIV-2 and SIVagm contain a highly conserved region with homology to the SOCS-box motif (Fig. 1A). The SOCS-box is a conserved domain found in proteins that bind to EloBC (Fig. 1A; Kile et al. 2002
). The SOCS-box consists of
25 to 40 amino acids and contains an N-terminal BC-box sequence and a C-terminal P/L-rich region. The BC-box contains a leucine at position 2 and cysteine at position 6 that are important for EloC binding (Kamura et al. 1998
, 2001
; Ohh et al. 1999
; Brower et al. 2002
), but the function of the downstream P/L-rich region is unclear (Kamura et al. 1998
, 2001
; Brower et al. 2002
). The SOCS-box-like motif of Vif is similar to that of other viral and cellular proteins, containing a BC-box-like sequence, the invariable leucine at position 2, and a C-terminal PPLP motif (Fig. 1A). The BC-box-like region of HIV-1 Vif is the most highly conserved sequence among all lentivirus Vif proteins (Rose et al. 2004
) and is required for viral replication (Goncalves et al. 1994
). A BC-box-like motif was recently identified in the adenovirus E4orf6 protein, which also interacts with Cul5-EloBC, but whether the BC-box mediates EloC binding is unknown (Querido et al. 2001
). In contrast to cellular BC-box proteins, the viral BC-box motifs of Vif and E4orf6 contain an alanine at position 6 instead of cysteine.
We performed experiments to assess whether the Vif BC-box-like motif is required for binding to the Cul5 complex using the Vif mutants
SLQYLAL, which deletes the BC-box motif from residues 142-154, and C114/133S, which mutates two conserved cysteine residues. These mutations were previously shown to abolish Vif-mediated enhancement of HIV infectivity in nonpermissive cells (Goncalves et al. 1994
; Sheehy et al. 2003
). Cul5 precipitated wild-type Vif, whereas Cul5 association was significantly decreased for Vif C114/133S and abolished for Vif
SLQYLAL (Fig. 1C). Thus, the BC-box is required for Cul5 association. The cysteine residues are N-terminal to the SOCS-box and do not share significant homology to other cullin-binding proteins, and thus are unlikely to be directly involved in binding. Rather, the cysteines may be important for protein conformation or other as yet unknown functions. As demonstrated previously, wild-type Vif decreased steady-state levels of APOBEC3G, whereas equivalent levels of the Vif mutants failed to reduce APOBEC3G levels (Fig. 1D, middle). Both mutants retained the ability to bind APOBEC3G (Fig. 1D), demonstrating that Vif associates independently with APOBEC3G and Cul5. Vif
SLQYLAL was severely impaired for the production of infectious HIV-1 in the presence of ectopically expressed APOBEC3G, with infectivity indistinguishable from that of Vif-deficient virus (Fig. 1E). These results suggest that association of Vif with Cul5 is required to counteract APOBEC3G and produce infectious virus.
The preceding experiments demonstrate that the Vif BC-box-like motif is required to induce APOBEC3G degradation, bind the Cul5 complex, and enhance viral infectivity. The Vif BC-box-like motif contains several signature hydrophobic residues (i.e., L145, L148, and L163) that are shared with the BC-boxes of cellular proteins, including VHL, EloA, and SOCS-1 (Stebbins et al. 1999
; Kile et al. 2002
). To determine if Vif contains a functional BC-box, we assessed the ability of point mutants in the BC-box-like motif to interact with the Cul5 complex. In agreement with the preceding experiments (Fig. 1B,C), wild-type Vif was coprecipitated in the presence of Cul5, but not in its absence or with Cul2, and the BC-box mutant Vif
SLQYLAL failed to interact with Cul5 (Fig. 2A). Equivalent expression of cullin and Vif proteins was confirmed by Western blot (Fig. 2B). Mutation of the invariant L145 at position 2 in the BC-box completely disrupted binding to the Cul5 complex. Vif Q146A, A149G, and L150A exhibited an
75% to 85% decrease in association with Cul5 when compared with wild type. However, S144A, Y147A, and L148A were capable of coprecipitating Cul5, albeit at lower levels than wild-type Vif. Thus, Vif mutants with low or undetectable binding to the Cul5-EloBC complex (L145A, A149G, and L150A) failed to reduce APOBEC3G levels (Fig. 2C). Q146A showed decreased binding to the Cul5 complex but wild-type ability to decrease APOBEC3G levels. While glutamine is the most common residue at position 3 in cellular BC-box motifs, a high degree of sequence variability is observed at this site (Kile et al. 2002
). Only one human SOCS-box protein, ASB-2, contains an alanine at position 3 [PLAHLCR]. This protein is capable of binding EloBC (Kamura et al. 1998
), suggesting that an alanine at position 3 does not prevent EloC binding and raising the possibility that Vif Q146A binds EloC in the Cul5 complex with a reduced affinity that is sufficient to mediate APOBEC3G degradation, but not coprecipitation by Cul5. These findings suggest that specific amino acids in the BC-box required for binding to the Cul5 complex are also required to induce APOBEC3G degradation.
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Homology modeling of the Vif BC-box using the VHL structure suggests that Vif residues required for Cul5 association cluster at the Vif-EloC interface (Fig. 2D). Residues L145, Q146, A149, and L150 are modeled on the face of the BC-box helix proximal to EloC. L145 at position 2 projects into the hydrophobic binding pocket of EloC, similar to VHL L158. Mutation of these residues disrupted or significantly impaired the association of Vif with Cul5 (Fig. 2A). Similarly, analogous mutations in the BC-box motifs of VHL, SOCS-1, Muf1, and mMED8 disrupted EloC binding (Kamura et al. 1998
, 2001
; Ohh et al. 1999
; Brower et al. 2002
). In particular, mutation of leucine at position 2 in the BC-box disrupts function for all characterized BC-box motifs, including that of Vif (Fig. 2). Mutation at A149 in Vif (position 6) also disrupts association with Cul5. This position is important in cellular BC-box proteins as well, even though cellular BC-boxes contain a conserved cysteine at this site in contrast to the conserved alanine in viral BC-boxes. Mutation of Y147 in Vif and the corresponding residue in VHL E160 (Ohh et al. 1999
) did not significantly affect association with Cul5. Our results also highlight several differences between the sequence requirements of cellular BC-box proteins and Vif. Whereas Vif L150 at position 7 is important for Vif binding to EloC, mutation of the corresponding residue in VHL does not affect EloC binding (Ohh et al. 1999
). Another difference is that L148 at position 5 of Vif is not essential for EloC binding, whereas the corresponding residue in VHL makes hydrophobic contacts to EloC (Stebbins et al. 1999
). Thus, although functional studies and homology modeling suggest that the Vif BC-box motif shares a similar structural organization with that of VHL, it also has distinct sequence requirements.
The sequences in Vif required for interaction with the Cul5 complex were further investigated by assessing the ability of recombinant GST-Vif fusion proteins to interact with EloC. We showed that purified GST-Vif(90-160), which contains the BC-box but not the downstream P/L-rich sequence, interacts with EloC expressed in 293T cells (Fig. 3A). However, neither GST nor GST-Vif(90-140), which lacks the BC-box motif, bound detectable amounts of EloC. Using purified recombinant Strep-EloC, we then showed that GST-Vif(90-160) specifically coprecipitated Strep-EloC (Fig. 3B), implying that Vif and EloC interact directly and do not require additional components of the Cul5 complex. These data further suggest that the BC-box motif of Vif, but not the P/L-rich region, is required for its interaction with EloC and the Cul5 complex.
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Vif is phosphorylated on several serine and threonine residues, which plays an important role in regulating HIV-1 replication and infectivity (Yang et al. 1996
; Yang and Gabuzda 1998
). However, the specific functional consequences of Vif phosphorylation are unclear. Unexpectedly, mutation of the conserved phosphorylation sites T96, S144, and T188 did not decrease the ability of Vif to induce APOBEC3G degradation (Mehle et al. 2004
). S144 in the Vif BC-box is a major phosphorylation site. The S144A mutation in Vif prevents phosphorylation at this site and significantly impairs but does not abolish Vif function and viral replication (Yang et al. 1996
; Yang and Gabuzda 1998
). Given that the BC-box is tightly associated with EloC via hydrophobic interactions (Fig. 2D; Stebbins et al. 1999
), we hypothesized that a phosphorylated BC-box might not be accommodated at the Vif-EloC interface.
We therefore investigated the possibility that binding between Vif and EloC is regulated by phosphorylation at S144 in the Vif BC-box. Binding reactions were performed with recombinant EloC and phosphorylated or nonphosphorylated peptides corresponding to the Vif BC-box (amino acids 144-158). The nonphosphorylated BC-box peptide was capable of precipitating EloC (Fig. 3C). However, the phosphorylated peptide failed to interact with EloC (Fig. 3C). We then performed experiments to determine if phosphorylation of Vif affects EloC binding in cells. We previously showed that stimulation of 293T cells with PMA and okadaic acid (OKA) results in phosphorylation of Vif at S144, in addition to T155 and T188 (Yang et al. 1996
). EloC and wild-type or S144A Vif were coexpressed in 293T cells treated with PMA/OKA for 0, 5, or 10 min to induce Vif phosphorylation, followed by cell lysis and immunoprecipitation of EloC (Fig. 3D). Stimulation for 5 or 10 min decreased coprecipitation of Vif by EloC by
50% and 75%, respectively, compared with unstimulated cells (Fig. 3D). In contrast, similar levels of S144A were precipitated by EloC in the presence or absence of PMA/OKA treatment (Fig. 3E). These findings suggest that phosphorylation at S144 negatively regulates binding of the Vif BC-box to EloC. Phosphorylation of the cellular SOCS-box proteins SOCS1 and SOCS3 disrupts their association with EloC, but neither of these proteins are known to be phosphorylated in the BC-box motif (Chen et al. 2002
; Haan et al. 2003
). Whereas nonphosphorylated SOCS3 can bind EloC, phosphorylated SOCS3 is selectively recognized by p120 RasGAP, Nck, and Crk-L, activating downstream signaling pathways (Cacalano et al. 2001
; Sitko et al. 2004
). These findings raise the possibility that phosphorylation of Vif, in addition to negatively regulating the association with EloC, may also regulate another as yet unknown function that is important for HIV replication. For example, by analogy with SOCS3, phosphorylated Vif might be selectively recognized by an as yet unknown cellular protein. Alternatively, Vif phosphorylation may alter its subcellular localization, as is the case for many phosphoproteins (Blenis and Resh 1993
), leading to APOBEC3G sequestration. Such alternative functions of Vif could interfere with the antiviral activity of APOBEC3G without inducing its degradation. However, we cannot exclude the possibility that the S144A mutant contributes significantly to APOBEC3G degradation in a manner that only becomes obvious after multiple rounds of infection.
Vif is autoubiquitinated within the Cul5 complex
In addition to phosphorylation, Vif is post-translationally modified by ubiquitin (Mehle et al. 2004
). The SOCS-box proteins SOCS3 and CIS are also ubiquitinated and rapidly degraded (Verdier et al. 1998
; Zhang et al. 1999
), and the F-box proteins Grr1 and Cdc4 are autoubiquitinated within their SCF complex (Zhou and Howley 1998
; Galan and Peter 1999
). Although Yu et al. showed that Cul5 is the E3 for APOBEC3G (Yu et al. 2003
), it is unclear whether Vif is also ubiquitinated by Cul5. Therefore, we performed experiments to determine if Cul5 can ubiquitinate Vif. Vif mutants
SLQYLAL and C114/133S are defective for binding to the Cul5 complex (Fig. 1C). Wild-type and mutant Vif were expressed at high levels to permit detection of polyubiquitinated forms in the absence of APOBEC3G. The ubiquitination of these mutants was reduced when compared with wild type (Fig. 4A), suggesting that association with the Cul5 complex is important for Vif ubiquitination. Furthermore, overexpression of Cul5 enhanced both mono- and polyubiquitination of Vif, whereas overexpression of the dominant negative Cul5
Nedd8 did not (Fig. 4B). Overexpression of Cul5
Nedd8 also prevented the increase in Vif ubiquitination associated with APOBEC3G coexpression. The small amounts of ubiquitinated Vif observed in the presence of Cul5
Nedd8 may result from the activity of endogenous wild-type Cul5 or another E3. Immunopurified Cul5 was capable of directing the in vitro ubiquitination of Vif (Fig. 4C). The ubiquitination of Vif was specific to Cul5, as omitting ubiquitin, ATP, or Cul5 prevented ubiquitination. These results suggest that the target, APOBEC3G, and the specificity-determining factor, Vif, are ubiquitinated by the same E3, Cul5-EloBC. This is similar to the F-box proteins Grr1 and Cdc4, which can be ubiquitinated and degraded by their own SCF complex (Zhou and Howley 1998
; Galan and Peter 1999
). Thus, the degradation of SOCS-box proteins by their cullin complexes may permit dynamic substrate recognition by initiating a rapid exchange of the recognition module within the E3 complex.
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| Materials and methods |
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| Acknowledgments |
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| Footnotes |
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Article and publication are at http://www.genesdev.org/cgi/doi/10.1101/gad.1249904.
5 Corresponding author.
E-MAIL dana_gabuzda{at}dfci.harvard.edu; FAX (617) 632-3113. ![]()
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G. Peng, T. Greenwell-Wild, S. Nares, W. Jin, K. J. Lei, Z. G. Rangel, P. J. Munson, and S. M. Wahl Myeloid differentiation and susceptibility to HIV-1 are linked to APOBEC3 expression Blood, July 1, 2007; 110(1): 393 - 400. [Abstract] [Full Text] [PDF] |
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K. Luo, E. Ehrlich, Z. Xiao, W. Zhang, G. Ketner, and X.-F. Yu Adenovirus E4orf6 assembles with Cullin5-ElonginB-ElonginC E3 ubiquitin ligase through an HIV/SIV Vif-like BC-box to regulate p53 FASEB J, June 1, 2007; 21(8): 1742 - 1750. [Abstract] [Full Text] [PDF] |
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R. Boggio, A. Passafaro, and S. Chiocca Targeting SUMO E1 to Ubiquitin Ligases: A VIRAL STRATEGY TO COUNTERACT SUMOYLATION J. Biol. Chem., May 25, 2007; 282(21): 15376 - 15382. [Abstract] [Full Text] [PDF] |
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S. Gallois-Montbrun, B. Kramer, C. M. Swanson, H. Byers, S. Lynham, M. Ward, and M. H. Malim Antiviral Protein APOBEC3G Localizes to Ribonucleoprotein Complexes Found in P Bodies and Stress Granules J. Virol., March 1, 2007; 81(5): 2165 - 2178. [Abstract] [Full Text] [PDF] |
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S. J. Orr, N. M. Morgan, R. J. Buick, C. R. Boyd, J. Elliott, J. F. Burrows, C. A. Jefferies, P. R. Crocker, and J. A. Johnston SOCS3 Targets Siglec 7 for Proteasomal Degradation and Blocks Siglec 7-mediated Responses J. Biol. Chem., February 9, 2007; 282(6): 3418 - 3422. [Abstract] [Full Text] [PDF] |
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S. J. Orr, N. M. Morgan, J. Elliott, J. F. Burrows, C. J. Scott, D. W. McVicar, and J. A. Johnston CD33 responses are blocked by SOCS3 through accelerated proteasomal-mediated turnover Blood, February 1, 2007; 109(3): 1061 - 1068. [Abstract] [Full Text] [PDF] |
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X. Wang, P. T. Dolan, Y. Dang, and Y.-H. Zheng Biochemical Differentiation of APOBEC3F and APOBEC3G Proteins Associated with HIV-1 Life Cycle J. Biol. Chem., January 19, 2007; 282(3): 1585 - 1594. [Abstract] [Full Text] [PDF] |
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Z. Xiao, E. Ehrlich, K. Luo, Y. Xiong, and X.-F. Yu Zinc chelation inhibits HIV Vif activity and liberates antiviral function of the cytidine deaminase APOBEC3G FASEB J, January 1, 2007; 21(1): 217 - 222. [Abstract] [Full Text] [PDF] |
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I. Paul, J. Cui, and E. L. Maynard Zinc binding to the HCCH motif of HIV-1 virion infectivity factor induces a conformational change that mediates protein-protein interactions PNAS, December 5, 2006; 103(49): 18475 - 18480. [Abstract] [Full Text] [PDF] |
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S. R. Jonsson, G. Hache, M. D. Stenglein, S. C. Fahrenkrug, V. Andresdottir, and R. S. Harris Evolutionarily conserved and non-conserved retrovirus restriction activities of artiodactyl APOBEC3F proteins Nucleic Acids Res., November 14, 2006; 34(19): 5683 - 5694. [Abstract] [Full Text] [PDF] |
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