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GENES & DEVELOPMENT 22:20-25, 2008
©2008 by Cold Spring Harbor Laboratory Press; ISSN 0890-9369/ $5.00
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RESEARCH COMMUNICATION

Transcription factories are nuclear subcompartments that remain in the absence of transcription

Jennifer A. Mitchell and Peter Fraser1

Laboratory of Chromatin and Gene Expression, The Babraham Institute, Cambridge CB22 3AT, United Kingdom

Nascent transcription occurs at nuclear foci of concentrated, hyperphosphorylated RNA polymerase II (RNAPII). We investigate RNAPII localization, distal gene coassociation, and Hbb locus conformation during inhibition of transcription. Our results show distal active genes remain associated with RNAPII foci and each other in the absence of elongation. When initiation is inhibited, active genes dissociate from RNAPII foci and each other, suggesting initiation is necessary to tether distal active genes to shared foci. In the absence of transcription RNAPII foci remain, indicating they are not simple accumulations of RNAPII on transcribed genes but exist as independent nuclear subcompartments.

[Keywords: RNA polymerase II; nuclear organization; fluorescence in situ hybridization; locus control region; chromosome conformation capture]]

Received August 23, 2007; revised version accepted November 1, 2007.


1 Corresponding author.

E-MAIL Peter.Fraser{at}bbsrc.ac.uk; FAX 44-1223-496022.

Supplemental material is available at http://www.genesdev.org.

Article is online at http://www.genesdev.org/cgi/doi/10.1101/gad.454008


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