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RESEARCH COMMUNICATION
Department of Molecular and Cell Biology, University of California at Berkely, Berkeley, California 94720 USA
Humans express four distinct non-protein-coding Y RNAs (ncRNAs). To investigate Y RNA functional diversification, we exploited an RNA-based affinity purification method to isolate ribonucleoproteins (RNPs) assembled on individual human Y RNAs. Silver staining and mass spectrometry revealed that the Ro and La proteins assemble with all Y RNAs, while additional proteins associate with specific Y RNAs. Unexpectedly, Y5 RNA uniquely copurified ribosomal protein L5 and its binding partner 5S RNA. These findings reveal a contribution of Y5 to 5S surveillance and suggest that interactions between Ro-Y5 and L5–5S RNPs establish 5S RNA as a target of quality control.
[Keywords: RNA Affinity in Tandem (RAT); noncoding RNA; quality control surveillance]]
Received August 13, 2007; revised version accepted October 11, 2007.
E-MAIL kcollins{at}berkeley.edu; FAX (510) 643-6334.
3 E-MAIL jh2721{at}columbia.edu; FAX .
Supplemental material is available at http://www.genesdev.org.
Article is online at http://www.genesdev.org/cgi/doi/10.1101/gad.1603907
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