Genes and Development Attend a BioResearch Product Faire

Home Help [Feedback] [For Subscribers] [Archive] [Search] [Contents]
 QUICK SEARCH:   [advanced]


     


GENES & DEVELOPMENT 20:2349-2354, 2006
©2006 by Cold Spring Harbor Laboratory Press; ISSN 0890-9369/ $5.00
This Article
Right arrow Full Text
Right arrow Full Text (PDF)
Right arrow Supplemental Reseach Data
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Right arrow Citation Map
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Download to citation manager
Right arrow reprints & permissions
Citing Articles
Right arrow Citing Articles via HighWire
Right arrow Citing Articles via Google Scholar
Google Scholar
Right arrow Articles by Splinter, E.
Right arrow Articles by de Laat, W.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Splinter, E.
Right arrow Articles by de Laat, W.
Social Bookmarking
 Add to CiteULike   Add to Connotea   Add to Del.icio.us   Add to Digg   Add to Reddit   Add to Technorati  
What's this?

RESEARCH COMMUNICATION

CTCF mediates long-range chromatin looping and local histone modification in the beta-globin locus

Erik Splinter1,, Helen Heath1,, Jurgen Kooren, Robert-Jan Palstra, Petra Klous, Frank Grosveld, Niels Galjart and Wouter de Laat2

Department of Cell Biology and Genetics, Erasmus Medical Center, 3000 DR Rotterdam, The Netherlands

CTCF (CCCTC-binding factor) binds sites around the mouse beta-globin locus that spatially cluster in the erythroid cell nucleus. We show that both conditional deletion of CTCF and targeted disruption of a DNA-binding site destabilize these long-range interactions and cause local loss of histone acetylation and gain of histone methylation, apparently without affecting transcription at the locus. Our data demonstrate that CTCF is directly involved in chromatin architecture and regulates local balance between active and repressive chromatin marks. We postulate that throughout the genome, relative position and stability of CTCF-mediated loops determine their effect on enhancer–promoter interactions, with gene insulation as one possible outcome.

[Keywords: CTCF; globin; insulator; higher-order chromatin structure; looping; transcription]

Received March 14, 2006; revised version accepted June 12, 2006.


1 These authors contributed equally to this work.

2 Corresponding author.

E-MAIL w.delaat{at}erasmusmc.nl; FAX 31-10-4089468.

Supplemental material is available at http://www.genesdev.org.

Article is online at http://www.genesdev.org/cgi/doi/10.1101/gad.399506.


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us   Add to Digg Digg   Add to Reddit Reddit   Add to Technorati Technorati    What's this?


This article has been cited by other articles:


Home page
Nucleic Acids ResHome page
A. A. Gavrilov and S. V. Razin
Spatial configuration of the chicken {alpha}-globin gene domain: immature and active chromatin hubs
Nucleic Acids Res., August 1, 2008; 36(14): 4629 - 4640.
[Abstract] [Full Text] [PDF]


Home page
Proc. Natl. Acad. Sci. USAHome page
E. D. Rubio, D. J. Reiss, P. L. Welcsh, C. M. Disteche, G. N. Filippova, N. S. Baliga, R. Aebersold, J. A. Ranish, and A. Krumm
CTCF physically links cohesin to chromatin
PNAS, June 17, 2008; 105(24): 8309 - 8314.
[Abstract] [Full Text] [PDF]


Home page
Mol. Cell. Biol.Home page
V. Singh and M. Srivastava
Enhancer Blocking Activity of the Insulator at H19-ICR Is Independent of Chromatin Barrier Establishment
Mol. Cell. Biol., June 1, 2008; 28(11): 3767 - 3775.
[Abstract] [Full Text] [PDF]


Home page
J. Exp. Med.Home page
A. Williams and R. A. Flavell
The role of CTCF in regulating nuclear organization
J. Exp. Med., April 14, 2008; 205(4): 747 - 750.
[Abstract] [Full Text] [PDF]


Home page
Genes Dev.Home page
C. R. Brown, C. J. Kennedy, V. A. Delmar, D. J. Forbes, and P. A. Silver
Global histone acetylation induces functional genomic reorganization at mammalian nuclear pore complexes
Genes & Dev., March 1, 2008; 22(5): 627 - 639.
[Abstract] [Full Text] [PDF]


Home page
Mol. Cell. Biol.Home page
L. Han, D.-H. Lee, and P. E. Szabo
CTCF Is the Master Organizer of Domain-Wide Allele-Specific Chromatin at the H19/Igf2 Imprinted Region
Mol. Cell. Biol., February 1, 2008; 28(3): 1124 - 1135.
[Abstract] [Full Text] [PDF]


Home page
Proc. Natl. Acad. Sci. USAHome page
A. V. Tsytsykova, R. Rajsbaum, J. V. Falvo, F. Ligeiro, S. R. Neely, and A. E. Goldfeld
Activation-dependent intrachromosomal interactions formed by the TNF gene promoter and two distal enhancers
PNAS, October 23, 2007; 104(43): 16850 - 16855.
[Abstract] [Full Text] [PDF]


Home page
J. Immunol.Home page
J. Gomos-Klein, F. Harrow, J. Alarcon, and B. D. Ortiz
CTCF-Independent, but Not CTCF-Dependent, Elements Significantly Contribute to TCR-{alpha} Locus Control Region Activity
J. Immunol., July 15, 2007; 179(2): 1088 - 1095.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
J. Kooren, R.-J. Palstra, P. Klous, E. Splinter, M. von Lindern, F. Grosveld, and W. de Laat
beta-Globin Active Chromatin Hub Formation in Differentiating Erythroid Cells and in p45 NF-E2 Knock-out Mice
J. Biol. Chem., June 1, 2007; 282(22): 16544 - 16552.
[Abstract] [Full Text] [PDF]


Home page
Mol. Cell. Biol.Home page
I. Chernukhin, S. Shamsuddin, S. Y. Kang, R. Bergstrom, Y.-W. Kwon, W. Yu, J. Whitehead, R. Mukhopadhyay, F. Docquier, D. Farrar, et al.
CTCF Interacts with and Recruits the Largest Subunit of RNA Polymerase II to CTCF Target Sites Genome-Wide
Mol. Cell. Biol., March 1, 2007; 27(5): 1631 - 1648.
[Abstract] [Full Text] [PDF]


Home page
Mol. Cell. Biol.Home page
A. Kim, C. M. Kiefer, and A. Dean
Distinctive Signatures of Histone Methylation in Transcribed Coding and Noncoding Human {beta}-Globin Sequences
Mol. Cell. Biol., February 15, 2007; 27(4): 1271 - 1279.
[Abstract] [Full Text] [PDF]




Home Help [Feedback] [For Subscribers] [Archive] [Search] [Contents]
Genome Res. Learn. Mem.
Protein Science RNA Genes Dev.
Copyright © 2006 by Cold Spring Harbor Laboratory Press.