Genes and Development

Home Help [Feedback] [For Subscribers] [Archive] [Search] [Contents]
 QUICK SEARCH:   [advanced]


     


GENES & DEVELOPMENT 19:489-501, 2005
©2005 by Cold Spring Harbor Laboratory Press; ISSN 0890-9369/ $5.00
This Article
Right arrow Full Text
Right arrow Full Text (PDF)
Right arrow Supplemental Research Data
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Right arrow Citation Map
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Download to citation manager
Right arrow reprints & permissions
Citing Articles
Right arrow Citing Articles via HighWire
Right arrow Citing Articles via Google Scholar
Google Scholar
Right arrow Articles by Kanellopoulou, C.
Right arrow Articles by Rajewsky, K.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Kanellopoulou, C.
Right arrow Articles by Rajewsky, K.
Social Bookmarking
 Add to CiteULike   Add to Connotea   Add to Del.icio.us   Add to Digg   Add to Reddit   Add to Technorati  
What's this?

RESEARCH PAPER

Dicer-deficient mouse embryonic stem cells are defective in differentiation and centromeric silencing

Chryssa Kanellopoulou1,4, Stefan A. Muljo2,4, Andrew L. Kung1, Shridar Ganesan1, Ronny Drapkin1, Thomas Jenuwein3, David M. Livingston1,5 and Klaus Rajewsky2,6

1 The Dana-Farber Cancer Institute, Department of Cancer Biology and 2 The CBR Institute for Biomedical Research and Department of Pathology, Harvard Medical School, Boston, Massachusetts 02115, USA; 3 Research Institute of Molecular Pathology, The Vienna Biocenter, A-1030 Vienna, Austria

Dicer is the enzyme that cleaves double-stranded RNA (dsRNA) into 21–25-nt-long species responsible for sequence-specific RNA-induced gene silencing at the transcriptional, post-transcriptional, or translational level. We disrupted the dicer-1 (dcr-1) gene in mouse embryonic stem (ES) cells by conditional gene targeting and generated Dicer-null ES cells. These cells were viable, despite being completely defective in RNA interference (RNAi) and the generation of microRNAs (miRNAs). However, the mutant ES cells displayed severe defects in differentiation both in vitro and in vivo. Epigenetic silencing of centromeric repeat sequences and the expression of homologous small dsRNAs were markedly reduced. Re-expression of Dicer in the knockout cells rescued these phenotypes. Our data suggest that Dicer participates in multiple, fundamental biological processes in a mammalian organism, ranging from stem cell differentiation to the maintenance of centromeric heterochromatin structure and centromeric silencing.

[Keywords: RNA interference; microRNA; heterochromatin silencing; DNA methylation]

Received August 11, 2004; revised version accepted December 14, 2004.


Supplemental material is available at http://www.genesdev.org.

Article and publication date are at http://www.genesdev.org/cgi/doi/10.1101/gad.1248505.

Corresponding authors.

4 These authors contributed equally to this work.

5 E-MAIL david_livingston{at}dfci.harvard.edu; FAX (617) 632-4831.

6 E-MAIL rajewsky{at}cbr.med.harvard.edu; FAX (617) 278-3129.


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us   Add to Digg Digg   Add to Reddit Reddit   Add to Technorati Technorati    What's this?


This article has been cited by other articles:


Home page
J. Cell Biol.Home page
R. Mudhasani, Z. Zhu, G. Hutvagner, C. M. Eischen, S. Lyle, L. L. Hall, J. B. Lawrence, A. N. Imbalzano, and S. N. Jones
Loss of miRNA biogenesis induces p19Arf-p53 signaling and senescence in primary cells
J. Cell Biol., June 30, 2008; 181(7): 1055 - 1063.
[Abstract] [Full Text] [PDF]


Home page
ScienceHome page
Y. Ogawa, B. K. Sun, and J. T. Lee
Intersection of the RNA Interference and X-Inactivation Pathways
Science, June 6, 2008; 320(5881): 1336 - 1341.
[Abstract] [Full Text] [PDF]


Home page
Genome ResHome page
E.-s. Saito, V. W. Keng, J. Takeda, and K. Horie
Translation from nonautonomous type IAP retrotransposon is a critical determinant of transposition activity: Implication for retrotransposon-mediated genome evolution
Genome Res., June 1, 2008; 18(6): 859 - 868.
[Abstract] [Full Text] [PDF]


Home page
Stem CellsHome page
L. C. Laurent, J. Chen, I. Ulitsky, F.-J. Mueller, C. Lu, R. Shamir, J.-B. Fan, and J. F. Loring
Comprehensive MicroRNA Profiling Reveals a Unique Human Embryonic Stem Cell Signature Dominated by a Single Seed Sequence
Stem Cells, June 1, 2008; 26(6): 1506 - 1516.
[Abstract] [Full Text] [PDF]


Home page
J. Neurosci.Home page
D. Damiani, J. J. Alexander, J. R. O'Rourke, M. McManus, A. P. Jadhav, C. L. Cepko, W. W. Hauswirth, B. D. Harfe, and E. Strettoi
Dicer Inactivation Leads to Progressive Functional and Structural Degeneration of the Mouse Retina
J. Neurosci., May 7, 2008; 28(19): 4878 - 4887.
[Abstract] [Full Text] [PDF]


Home page
Proc Am Thorac SocHome page
Y. Lu, T. Okubo, E. Rawlins, and B. L. M. Hogan
Epithelial Progenitor Cells of the Embryonic Lung and the Role of MicroRNAs in Their Proliferation
Proceedings of the ATS, April 15, 2008; 5(3): 300 - 304.
[Abstract] [Full Text] [PDF]


Home page
Hum Mol GenetHome page
L. Chen and G. Q. Daley
Molecular basis of pluripotency
Hum. Mol. Genet., April 15, 2008; 17(R1): R23 - R27.
[Abstract] [Full Text] [PDF]


Home page
Hum Mol GenetHome page
G. W. Yeo, N. Coufal, S. Aigner, B. Winner, J. A. Scolnick, M. C.N. Marchetto, A. R. Muotri, C. Carson, and F. H. Gage
Multiple layers of molecular controls modulate self-renewal and neuronal lineage specification of embryonic stem cells
Hum. Mol. Genet., April 15, 2008; 17(R1): R67 - R75.
[Abstract] [Full Text] [PDF]


Home page
Hum Mol GenetHome page
V. V. Lunyak and M. G. Rosenfeld
Epigenetic regulation of stem cell fate
Hum. Mol. Genet., April 15, 2008; 17(R1): R28 - R36.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
A. Blakaj and H. Lin
Piecing Together the Mosaic of Early Mammalian Development through MicroRNAs
J. Biol. Chem., April 11, 2008; 283(15): 9505 - 9508.
[Abstract] [Full Text] [PDF]


Home page
Proc. Natl. Acad. Sci. USAHome page
T. L. Cuellar, T. H. Davis, P. T. Nelson, G. B. Loeb, B. D. Harfe, E. Ullian, and M. T. McManus
Dicer loss in striatal neurons produces behavioral and neuroanatomical phenotypes in the absence of neurodegeneration
PNAS, April 8, 2008; 105(14): 5614 - 5619.
[Abstract] [Full Text] [PDF]


Home page
Mol. Cell. Biol.Home page
J. L. DeBeauchamp, A. Moses, V. J. P. Noffsinger, D. L. Ulrich, G. Job, A. M. Kosinski, and J. F. Partridge
Chp1-Tas3 Interaction Is Required To Recruit RITS to Fission Yeast Centromeres and for Maintenance of Centromeric Heterochromatin
Mol. Cell. Biol., April 1, 2008; 28(7): 2154 - 2166.
[Abstract] [Full Text] [PDF]


Home page
J. Virol.Home page
A. Poleshko, I. Palagin, R. Zhang, P. Boimel, C. Castagna, P. D. Adams, A. M. Skalka, and R. A. Katz
Identification of Cellular Proteins That Maintain Retroviral Epigenetic Silencing: Evidence for an Antiviral Response
J. Virol., March 1, 2008; 82(5): 2313 - 2323.
[Abstract] [Full Text] [PDF]


Home page
Proc. Natl. Acad. Sci. USAHome page
T. Kobayashi, J. Lu, B. S. Cobb, S. J. Rodda, A. P. McMahon, E. Schipani, M. Merkenschlager, and H. M. Kronenberg
Dicer-dependent pathways regulate chondrocyte proliferation and differentiation
PNAS, February 12, 2008; 105(6): 1949 - 1954.
[Abstract] [Full Text] [PDF]


Home page
Eukaryot CellHome page
T. M. Hammond, J. W. Bok, M. D. Andrewski, Y. Reyes-Dominguez, C. Scazzocchio, and N. P. Keller
RNA Silencing Gene Truncation in the Filamentous Fungus Aspergillus nidulans
Eukaryot. Cell, February 1, 2008; 7(2): 339 - 349.
[Abstract] [Full Text] [PDF]


Home page
Stem CellsHome page
U. Lakshmipathy and R. P. Hart
Concise Review: MicroRNA Expression in Multipotent Mesenchymal Stromal Cells
Stem Cells, February 1, 2008; 26(2): 356 - 363.
[Abstract] [Full Text] [PDF]


Home page
Clin. Cancer Res.Home page
A. J. Lowery, N. Miller, R. E. McNeill, and M. J. Kerin
MicroRNAs as Prognostic Indicators and Therapeutic Targets: Potential Effect on Breast Cancer Management
Clin. Cancer Res., January 15, 2008; 14(2): 360 - 365.
[Abstract] [Full Text] [PDF]


Home page
GeneticsHome page
C. J. Metcalfe, K. V. Bulazel, G. C. Ferreri, E. Schroeder-Reiter, G. Wanner, W. Rens, C. Obergfell, M. D. B. Eldridge, and R. J. O'Neill
Genomic Instability Within Centromeres of Interspecific Marsupial Hybrids
Genetics, December 1, 2007; 177(4): 2507 - 2517.
[Abstract] [Full Text] [PDF]


Home page
Proc. Natl. Acad. Sci. USAHome page
J. M. Calabrese, A. C. Seila, G. W. Yeo, and P. A. Sharp
RNA sequence analysis defines Dicer's role in mouse embryonic stem cells
PNAS, November 13, 2007; 104(46): 18097 - 18102.
[Abstract] [Full Text] [PDF]


Home page
J. Cell Biol.Home page
J. Lu and D. M. Gilbert
Proliferation-dependent and cell cycle regulated transcription of mouse pericentric heterochromatin
J. Cell Biol., November 5, 2007; 179(3): 411 - 421.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
T. A. Vickers, W. F. Lima, J. G. Nichols, and S. T. Crooke
Reduced levels of Ago2 expression result in increased siRNA competition in mammalian cells
Nucleic Acids Res., October 8, 2007; 35(19): 6598 - 6610.
[Abstract] [Full Text] [PDF]


Home page
Proc. Natl. Acad. Sci. USAHome page
A. Chakrabarty, S. Tranguch, T. Daikoku, K. Jensen, H. Furneaux, and S. K. Dey
MicroRNA regulation of cyclooxygenase-2 during embryo implantation
PNAS, September 18, 2007; 104(38): 15144 - 15149.
[Abstract] [Full Text] [PDF]


Home page
Mol. Cell. Biol.Home page
J. L. Goodier, L. Zhang, M. R. Vetter, and H. H. Kazazian Jr.
LINE-1 ORF1 Protein Localizes in Stress Granules with Other RNA-Binding Proteins, Including Components of RNA Interference RNA-Induced Silencing Complex
Mol. Cell. Biol., September 15, 2007; 27(18): 6469 - 6483.
[Abstract] [Full Text] [PDF]


Home page
J. Cell Sci.Home page
M. Negrini, M. Ferracin, S. Sabbioni, and C. M. Croce
MicroRNAs in human cancer: from research to therapy
J. Cell Sci., June 1, 2007; 120(11): 1833 - 1840.
[Abstract] [Full Text] [PDF]


Home page
GeneticsHome page
P. Neumann, H. Yan, and J. Jiang
The Centromeric Retrotransposons of Rice Are Transcribed and Differentially Processed by RNA Interference
Genetics, June 1, 2007; 176(2): 749 - 761.
[Abstract] [Full Text] [PDF]


Home page
GeneticsHome page
K. Horie, E.-s. Saito, V. W. Keng, R. Ikeda, H. Ishihara, and J. Takeda
Retrotransposons Influence the Mouse Transcriptome: Implication for the Divergence of Genetic Traits
Genetics, June 1, 2007; 176(2): 815 - 827.
[Abstract] [Full Text] [PDF]


Home page
J. Exp. Biol.Home page
J. S. Mattick
A new paradigm for developmental biology
J. Exp. Biol., May 1, 2007; 210(9): 1526 - 1547.
[Abstract] [Full Text] [PDF]


Home page
ScienceHome page
C. B. Schaefer, S. K. T. Ooi, T. H. Bestor, and D. Bourc'his
Epigenetic Decisions in Mammalian Germ Cells
Science, April 20, 2007; 316(5823): 398 - 399.
[Abstract] [Full Text] [PDF]


Home page
Genes Dev.Home page
F. Tang, M. Kaneda, D. O'Carroll, P. Hajkova, S. C. Barton, Y. A. Sun, C. Lee, A. Tarakhovsky, K. Lao, and M. A. Surani
Maternal microRNAs are essential for mouse zygotic development
Genes & Dev., March 15, 2007; 21(6): 644 - 648.
[Abstract] [Full Text] [PDF]


Home page
Genes Dev.Home page
E. P. Murchison, P. Stein, Z. Xuan, H. Pan, M. Q. Zhang, R. M. Schultz, and G. J. Hannon
Critical roles for Dicer in the female germline
Genes & Dev., March 15, 2007; 21(6): 682 - 693.
[Abstract] [Full Text] [PDF]


Home page
DevelopmentHome page
K. Kaji, J. Nichols, and B. Hendrich
Mbd3, a component of the NuRD co-repressor complex, is required for development of pluripotent cells
Development, March 15, 2007; 134(6): 1123 - 1132.
[Abstract] [Full Text] [PDF]


Home page
Mol. Biol. CellHome page
R. Papait, C. Pistore, D. Negri, D. Pecoraro, L. Cantarini, and I. M. Bonapace
Np95 Is Implicated in Pericentromeric Heterochromatin Replication and in Major Satellite Silencing
Mol. Biol. Cell, March 1, 2007; 18(3): 1098 - 1106.
[Abstract] [Full Text] [PDF]


Home page
DevelopmentHome page
H. Niwa
How is pluripotency determined and maintained?
Development, February 15, 2007; 134(4): 635 - 646.
[Abstract] [Full Text] [PDF]


Home page
Stem CellsHome page
R. Josephson, C. J. Ording, Y. Liu, S. Shin, U. Lakshmipathy, A. Toumadje, B. Love, J. D. Chesnut, P. W. Andrews, M. S. Rao, et al.
Qualification of Embryonal Carcinoma 2102Ep As a Reference for Human Embryonic Stem Cell Research
Stem Cells, February 1, 2007; 25(2): 437 - 446.
[Abstract] [Full Text] [PDF]


Home page
CarcinogenesisHome page
H. Osada and T. Takahashi
MicroRNAs in biological processes and carcinogenesis
Carcinogenesis, January 1, 2007; 28(1): 2 - 12.
[Abstract] [Full Text] [PDF]


Home page
Mol Biol EvolHome page
H.-R. Lee, P. Neumann, J. Macas, and J. Jiang
Transcription and Evolutionary Dynamics of the Centromeric Satellite Repeat CentO in Rice
Mol. Biol. Evol., December 1, 2006; 23(12): 2505 - 2520.
[Abstract] [Full Text] [PDF]


Home page
J. Exp. Med.Home page
B. S. Cobb, A. Hertweck, J. Smith, E. O'Connor, D. Graf, T. Cook, S. T. Smale, S. Sakaguchi, F. J. Livesey, A. G. Fisher, et al.
A role for Dicer in immune regulation
J. Exp. Med., October 30, 2006; 203(11): 2519 - 2527.
[Abstract] [Full Text] [PDF]


Home page
Genes Dev.Home page
T. Watanabe, A. Takeda, T. Tsukiyama, K. Mise, T. Okuno, H. Sasaki, N. Minami, and H. Imai
Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
Genes & Dev., July 1, 2006; 20(13): 1732 - 1743.
[Abstract] [Full Text] [PDF]


Home page
Proc. Natl. Acad. Sci. USAHome page
H. Bouzinba-Segard, A. Guais, and C. Francastel
Accumulation of small murine minor satellite transcripts leads to impaired centromeric architecture and function
PNAS, June 6, 2006; 103(23): 8709 - 8714.
[Abstract] [Full Text] [PDF]


Home page
Mol. Cell. Biol.Home page
F. Wang, N. Koyama, H. Nishida, T. Haraguchi, W. Reith, and T. Tsukamoto
The assembly and maintenance of heterochromatin initiated by transgene repeats are independent of the RNA interference pathway in Mammalian cells.
Mol. Cell. Biol., June 1, 2006; 26(11): 4028 - 4040.
[Abstract] [Full Text] [PDF]


Home page
NeurologyHome page
H. Paulson
RNA interference as potential therapy for neurodegenerative disease: Applications to inclusion-body myositis?
Neurology, January 24, 2006; 66(1_suppl_1): S114 - S117.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
J.-H. Lee and D. G. Skalnik
CpG-binding Protein (CXXC Finger Protein 1) Is a Component of the Mammalian Set1 Histone H3-Lys4 Methyltransferase Complex, the Analogue of the Yeast Set1/COMPASS Complex
J. Biol. Chem., December 16, 2005; 280(50): 41725 - 41731.
[Abstract] [Full Text] [PDF]


Home page
J. Cell Sci.Home page
H. Nakashima, M. Nakano, R. Ohnishi, Y. Hiraoka, Y. Kaneda, A. Sugino, and H. Masumoto
Assembly of additional heterochromatin distinct from centromere-kinetochore chromatin is required for de novo formation of human artificial chromosome
J. Cell Sci., December 15, 2005; 118(24): 5885 - 5898.
[Abstract] [Full Text] [PDF]


Home page
Genes Dev.Home page
E. Maniataki and Z. Mourelatos
A human, ATP-independent, RISC assembly machine fueled by pre-miRNA
Genes & Dev., December 15, 2005; 19(24): 2979 - 2990.
[Abstract] [Full Text] [PDF]


Home page
Mol. Cell. Biol.Home page
D. Haussecker and N. J. Proudfoot
Dicer-Dependent Turnover of Intergenic Transcripts from the Human {beta}-Globin Gene Cluster
Mol. Cell. Biol., November 1, 2005; 25(21): 9724 - 9733.
[Abstract] [Full Text] [PDF]


Home page
RNAHome page
J. L. PELLINO, L. JASKIEWICZ, W. FILIPOWICZ, and E. J. SONTHEIMER
ATP modulates siRNA interactions with an endogenous human Dicer complex
RNA, November 1, 2005; 11(11): 1719 - 1724.
[Abstract] [Full Text] [PDF]


Home page
DevelopmentHome page
I. Alvarez-Garcia and E. A. Miska
MicroRNA functions in animal development and human disease
Development, November 1, 2005; 132(21): 4653 - 4662.
[Abstract] [Full Text] [PDF]


Home page
Genes Dev.Home page
I. Djupedal, M. Portoso, H. Spahr, C. Bonilla, C. M. Gustafsson, R. C. Allshire, and K. Ekwall
RNA Pol II subunit Rpb7 promotes centromeric transcription and RNAi-directed chromatin silencing
Genes & Dev., October 1, 2005; 19(19): 2301 - 2306.
[Abstract] [Full Text] [PDF]


Home page
ScienceHome page
P. D. Zamore and B. Haley
Ribo-gnome: The Big World of Small RNAs
Science, September 2, 2005; 309(5740): 1519 - 1524.
[Abstract] [Full Text] [PDF]


Home page
Proc. Natl. Acad. Sci. USAHome page
E. P. Murchison, J. F. Partridge, O. H. Tam, S. Cheloufi, and G. J. Hannon
Characterization of Dicer-deficient murine embryonic stem cells
PNAS, August 23, 2005; 102(34): 12135 - 12140.
[Abstract] [Full Text] [PDF]


Home page
Sci SignalHome page
J. P. Morris IV and M. T. McManus
Slowing Down the Ras Lane: miRNAs as Tumor Suppressors?
Sci. Signal., August 16, 2005; 2005(297): pe41 - pe41.
[Abstract] [Full Text] [PDF]


Home page
Proc. Natl. Acad. Sci. USAHome page
B. D. Harfe, M. T. McManus, J. H. Mansfield, E. Hornstein, and C. J. Tabin
The RNaseIII enzyme Dicer is required for morphogenesis but not patterning of the vertebrate limb
PNAS, August 2, 2005; 102(31): 10898 - 10903.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
S. D. Rose, D.-H. Kim, M. Amarzguioui, J. D. Heidel, M. A. Collingwood, M. E. Davis, J. J. Rossi, and M. A. Behlke
Functional polarity is introduced by Dicer processing of short substrate RNAs
Nucleic Acids Res., July 26, 2005; 33(13): 4140 - 4156.
[Abstract] [Full Text] [PDF]


Home page
J. Exp. Med.Home page
S. A. Muljo, K. M. Ansel, C. Kanellopoulou, D. M. Livingston, A. Rao, and K. Rajewsky
Aberrant T cell differentiation in the absence of Dicer
J. Exp. Med., July 18, 2005; 202(2): 261 - 269.
[Abstract] [Full Text] [PDF]


Home page
Genes Dev.Home page
E. Bernstein and C. D. Allis
RNA meets chromatin
Genes & Dev., July 15, 2005; 19(14): 1635 - 1655.
[Abstract] [Full Text] [PDF]


Home page
ScienceHome page
A. J. Giraldez, R. M. Cinalli, M. E. Glasner, A. J. Enright, J. M. Thomson, S. Baskerville, S. M. Hammond, D. P. Bartel, and A. F. Schier
MicroRNAs Regulate Brain Morphogenesis in Zebrafish
Science, May 6, 2005; 308(5723): 833 - 838.
[Abstract] [Full Text] [PDF]


Home page
J. Exp. Med.Home page
B. S. Cobb, T. B. Nesterova, E. Thompson, A. Hertweck, E. O'Connor, J. Godwin, C. B. Wilson, N. Brockdorff, A. G. Fisher, S. T. Smale, et al.
T cell lineage choice and differentiation in the absence of the RNase III enzyme Dicer
J. Exp. Med., May 2, 2005; 201(9): 1367 - 1373.
[Abstract] [Full Text] [PDF]