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GENES & DEVELOPMENT 19:2715-2726, 2005
©2005 by Cold Spring Harbor Laboratory Press; ISSN 0890-9369/ $5.00
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RESEARCH PAPER

Homologous recombination and nonhomologous end-joining repair pathways regulate fragile site stability

Michal Schwartz1, Eitan Zlotorynski2, Michal Goldberg1, Efrat Ozeri1, Ayelet Rahat1, Carlos le Sage2, Benjamin P.C. Chen3, David J. Chen3, Reuven Agami2 and Batsheva Kerem1,4

1 Department of Genetics, The Life Sciences Institute, The Hebrew University, Jerusalem, Israel 91904; 2 Division of Tumor Biology, The Netherlands Cancer Institute, 1066 CX Amsterdam, The Netherlands; 3 Department of Radiation Oncology, University of Texas Southwestern Medical Center at Dallas, Dallas 75390, Texas; USA

Common fragile sites are specific loci that form gaps and constrictions on metaphase chromosomes exposed to replication stress, which slows DNA replication. These sites have a role in chromosomal rearrangements in tumors; however, the molecular mechanism of their expression is unclear. Here we show that replication stress leads to focus formation of Rad51 and phosphorylated DNA-PKcs, key components of the homologous recombination (HR) and nonhomologous end-joining (NHEJ), double-strand break (DSB) repair pathways, respectively. Down-regulation of Rad51, DNA-PKcs, or Ligase IV, an additional component of the NHEJ repair pathway, leads to a significant increase in fragile site expression under replication stress. Replication stress also results in focus formation of the DSB markers, MDC1 and {gamma}H2AX. These foci colocalized with those of Rad51 and phospho-DNA-PKcs. Furthermore, {gamma}H2AX and phospho-DNA-PKcs foci were localized at expressed fragile sites on metaphase chromosomes. These findings suggest that DSBs are formed at common fragile sites as a result of replication perturbation. The repair of these breaks by both HR and NHEJ pathways is essential for chromosomal stability at these sites.

[Keywords: Common fragile sites; double-strand breaks; homologous recombination; nonhomologous end-joining; replication stress; genomic instability]

Received February 16, 2005; revised version accepted September 12, 2005.


Supplemental material is available at http://www.genesdev.org.

Article and publication are at http://www.genesdev.org/cgi/doi/10.1101/gad.340905.

4 Corresponding author.

E-MAIL kerem{at}cc.huji.ac.il; FAX 972-2-6584810.


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