|
|
|
Research Papers
Department of Molecular Biology, Princeton University, New Jersey 08544, USA.
Abstract
Transcriptional silencers in the yeast Saccharomyces induce position-specific, sequence-independent repression by promoting formation of a heterochromatin-like structure across sequences adjacent to them. We have examined the role of silencers in maintenance and inheritance of repression at the silent mating-type cassettes in yeast by monitoring the expression state of one of these cassettes following in vivo deletion of the adjacent silencer. Our experiments indicate that although silencer sequences are dispensable for the maintenance of repression in the absence of cell-cycle progression, silencers are required for the stable inheritance of a repressed state. That is, silenced loci from which the silencer is deleted most often become derepressed within one generation of losing the silencer. Thus, the heritability of a repressed state is not intrinsic to a silenced locus or to the chromatin encompassing it; rather, heritability of repression appears to be a property of the silencer itself.
This article has been cited by other articles:
![]() |
L. Gao and D. S. Gross Sir2 Silences Gene Transcription by Targeting the Transition between RNA Polymerase II Initiation and Elongation Mol. Cell. Biol., June 15, 2008; 28(12): 3979 - 3994. [Abstract] [Full Text] [PDF] |
||||
![]() |
L. Gao and D. S. Gross Using genomics and proteomics to investigate mechanisms of transcriptional silencing in Saccharomyces cerevisiae Brief Funct Genomic Proteomic, December 1, 2006; 5(4): 280 - 288. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. Matecic, K. Martins-Taylor, M. Hickman, J. Tanny, D. Moazed, and S. G. Holmes New Alleles of SIR2 Define Cell-Cycle-Specific Silencing Functions Genetics, August 1, 2006; 173(4): 1939 - 1950. [Abstract] [Full Text] [PDF] |
||||
![]() |
B. A. Tamburini, J. J. Carson, J. G. Linger, and J. K. Tyler Dominant Mutants of the Saccharomyces cerevisiae ASF1 Histone Chaperone Bypass the Need for CAF-1 in Transcriptional Silencing by Altering Histone and Sir Protein Recruitment Genetics, June 1, 2006; 173(2): 599 - 610. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. L. Kirchmaier and J. Rine Cell Cycle Requirements in Assembling Silent Chromatin in Saccharomyces cerevisiae Mol. Cell. Biol., February 1, 2006; 26(3): 852 - 862. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. Huang and D. Moazed Sister chromatid cohesion in silent chromatin: each sister to her own ring Genes & Dev., January 15, 2006; 20(2): 132 - 137. [Full Text] [PDF] |
||||
![]() |
M. Bulger Hyperacetylated Chromatin Domains: Lessons from Heterochromatin J. Biol. Chem., June 10, 2005; 280(23): 21689 - 21692. [Abstract] [Full Text] [PDF] |
||||
![]() |
E. Y. Xu, X. Bi, M. J. Holland, D. E. Gottschling, and J. R. Broach Mutations in the Nucleosome Core Enhance Transcriptional Silencing Mol. Cell. Biol., March 1, 2005; 25(5): 1846 - 1859. [Abstract] [Full Text] [PDF] |
||||
![]() |
K. Martins-Taylor, M. L. Dula, and S. G. Holmes Heterochromatin Spreading at Yeast Telomeres Occurs in M Phase Genetics, September 1, 2004; 168(1): 65 - 75. [Abstract] [Full Text] [PDF] |
||||
![]() |
E. Lebrun, G. Fourel, P.-A. Defossez, and E. Gilson A Methyltransferase Targeting Assay Reveals Silencer-Telomere Interactions in Budding Yeast Mol. Cell. Biol., March 1, 2003; 23(5): 1498 - 1508. [Abstract] [Full Text] [PDF] |
||||
![]() |
Q. Yu, R. Qiu, T. B. Foland, D. Griesen, C. S. Galloway, Y.-H. Chiu, J. Sandmeier, J. R. Broach, and X. Bi Rap1p and other transcriptional regulators can function in defining distinct domains of gene expression Nucleic Acids Res., February 15, 2003; 31(4): 1224 - 1233. [Abstract] [Full Text] [PDF] |
||||
![]() |
L. N. Rusche, A. L. Kirchmaier, and J. Rine Ordered Nucleation and Spreading of Silenced Chromatin in Saccharomyces cerevisiae Mol. Biol. Cell, July 1, 2002; 13(7): 2207 - 2222. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. Bedalov, T. Gatbonton, W. P. Irvine, D. E. Gottschling, and J. A. Simon Identification of a small molecule inhibitor of Sir2p PNAS, December 18, 2001; 98(26): 15113 - 15118. [Abstract] [Full Text] [PDF] |
||||
![]() |
F.-L. Sun, M. H. Cuaycong, and S. C. R. Elgin Long-Range Nucleosome Ordering Is Associated with Gene Silencing in Drosophila melanogaster Pericentric Heterochromatin Mol. Cell. Biol., April 15, 2001; 21(8): 2867 - 2879. [Abstract] [Full Text] |
||||
![]() |
A. L. Kirchmaier and J. Rine DNA Replication-Independent Silencing in S. cerevisiae Science, January 26, 2001; 291(5504): 646 - 650. [Abstract] [Full Text] |
||||
![]() |
K. A. Gardner and C. A. Fox The Sir1 protein's association with a silenced chromosome domain Genes & Dev., January 15, 2001; 15(2): 147 - 157. [Abstract] [Full Text] |
||||
![]() |
N. Ayoub, I. Goldshmidt, R. Lyakhovetsky, and A. Cohen A Fission Yeast Repression Element Cooperates With Centromere-like Sequences and Defines a mat Silent Domain Boundary Genetics, November 1, 2000; 156(3): 983 - 994. [Abstract] [Full Text] |
||||
![]() |
E. M. Stone, C. Reifsnyder, M. McVey, B. Gazo, and L. Pillus Two Classes of sir3 Mutants Enhance the sir1 Mutant Mating Defect and Abolish Telomeric Silencing in Saccharomyces cerevisiae Genetics, June 1, 2000; 155(2): 509 - 522. [Abstract] [Full Text] |
||||
![]() |
S. Enomoto, S. D. Johnston, and J. Berman Identification of a Novel Allele of SIR3 Defective in the Maintenance, but Not the Establishment, of Silencing in Saccharomyces cerevisiae Genetics, June 1, 2000; 155(2): 523 - 538. [Abstract] [Full Text] |
||||
![]() |
M. Srivastava, S. Hsieh, A. Grinberg, L. Williams-Simons, S.-P. Huang, and K. Pfeifer H19 and Igf2 monoallelic expression is regulated in two distinct ways by a shared cis acting regulatory region upstream of H19 Genes & Dev., May 15, 2000; 14(10): 1186 - 1195. [Abstract] [Full Text] |
||||
![]() |
T.-H. Cheng and M. R. Gartenberg Yeast heterochromatin is a dynamic structure that requires silencers continuously Genes & Dev., February 15, 2000; 14(4): 452 - 463. [Abstract] [Full Text] |
||||
![]() |
Y. Park and A. J. Lustig Telomere Structure Regulates the Heritability of Repressed Subtelomeric Chromatin in Saccharomyces cerevisiae Genetics, February 1, 2000; 154(2): 587 - 598. [Abstract] [Full Text] |
||||
![]() |
X. Bi, M. Braunstein, G.-J. Shei, and J. R. Broach The yeast HML I silencer defines a heterochromatin domain boundary by directional establishment of silencing PNAS, October 12, 1999; 96(21): 11934 - 11939. [Abstract] [Full Text] [PDF] |
||||
![]() |
X. Bi and J. R. Broach UASrpg can function as a heterochromatin boundary element in yeast Genes & Dev., May 1, 1999; 13(9): 1089 - 1101. [Abstract] [Full Text] |
||||
![]() |
G. Thon, K. P. Bjerling, and I. S. Nielsen Localization and Properties of a Silencing Element Near the mat3-M Mating-Type Cassette of Schizosaccharomyces pombe Genetics, March 1, 1999; 151(3): 945 - 963. [Abstract] [Full Text] |
||||
![]() |
A. Ansari and M. R. Gartenberg Persistence of an alternate chromatin structure at silenced loci in vitro PNAS, January 19, 1999; 96(2): 343 - 348. [Abstract] [Full Text] [PDF] |
||||
![]() |
D. S. Geraghty, H. B. Sucic, J. Chen, and D. S. Pederson Evidence That Partial Unwrapping of DNA from Nucleosomes Facilitates the Binding of Heat Shock Factor following DNA Replication in Yeast J. Biol. Chem., August 7, 1998; 273(32): 20463 - 20472. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. C. Schroeder and P. A. Weil Genetic Tests of the Role of Abf1p in Driving Transcription of the Yeast TATA Box Bindng Protein-encoding Gene, SPT15 J. Biol. Chem., July 31, 1998; 273(31): 19884 - 19891. [Abstract] [Full Text] [PDF] |
||||
![]() |
T.-H. Cheng, Y.-C. Li, and M. R. Gartenberg Persistence of an alternate chromatin structure at silenced loci in the absence of silencers PNAS, May 12, 1998; 95(10): 5521 - 5526. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. Enomoto and J. Berman Chromatin assembly factor I contributes to the maintenance, but not the re-establishment, of silencing at the yeast silent mating loci Genes & Dev., January 15, 1998; 12(2): 219 - 232. [Abstract] [Full Text] |
||||
![]() |
A Busturia, C. Wightman, and S Sakonju A silencer is required for maintenance of transcriptional repression throughout Drosophila development Development, January 11, 1997; 124(21): 4343 - 4350. [Abstract] [PDF] |
||||